3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10626

Details:

PFam ID : PF10626

PFam Domain Description : Conjugative transposon protein TraO

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 62

Average sequence length: 158.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10626	D7JBC4_9BACE_1_99	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10626	F0ICR2_9FLAO_26_191	100

Sequence based PCA Plot of the family - PF10626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=8
Motif2 Start=24 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay