3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10614

Details:

PFam ID : PF10614

PFam Domain Description : Type VIII secretion system (T8SS), CsgF protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 64

Average sequence length: 128.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10614	B3QD05_RHOPT_1_77	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10614	Q392B8_BURS3_1_145	100

Sequence based PCA Plot of the family - PF10614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=128 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay