3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10613

Details:

PFam ID : PF10613

PFam Domain Description : Ligated ion channel L-glutamate- and glycine-binding site

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 264

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10613	C3YMH3_BRAFL_4_75	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10613	Q7QDT5_ANOGA_312_382	100

Sequence based PCA Plot of the family - PF10613 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=20
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay