3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10607

Details:

PFam ID : PF10607

PFam Domain Description : CTLH/CRA C-terminal to LisH motif domain

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 573

Average sequence length: 164.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10607	Q24DE5_TETTH_160_317	69.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10607	Q5BXU0_SCHJA_189_374	100

Sequence based PCA Plot of the family - PF10607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=1 Length=18
Motif3 Start=249 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay