3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10606

Details:

PFam ID : PF10606

PFam Domain Description : Homer-binding domain of metabotropic glutamate receptor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 45.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10606	Q0QDS2_MACFA_258_293	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10606	F1Q6Y9_DANRE_1109_1153	100

Sequence based PCA Plot of the family - PF10606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay