3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10605

Details:

PFam ID : PF10605

PFam Domain Description : 3HB-oligomer hydrolase (3HBOH)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 49

Average sequence length: 523.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10605	F0G908_9BURK_1_97	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10605	B9MAR4_ACIET_19_726	100

Sequence based PCA Plot of the family - PF10605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay