3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10602

Details:

PFam ID : PF10602

PFam Domain Description : 26S proteasome subunit RPN7

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 250

Average sequence length: 169.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10602	C6LTU2_GIAIB_60_258	57.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10602	E2L8E1_MONPE_116_235	99.5

Sequence based PCA Plot of the family - PF10602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=154 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay