3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10601

Details:

PFam ID : PF10601

PFam Domain Description : LITAF-like zinc ribbon domain

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 403

Average sequence length: 70.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10601	D2XQ59_CHICK_1_47	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10601	B3S4R8_TRIAD_33_115	100

Sequence based PCA Plot of the family - PF10601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay