3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10597

Details:

PFam ID : PF10597

PFam Domain Description : U5-snRNA binding site 2 of PrP8

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 65

Average sequence length: 128.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10597	E9CG65_9EUKA_2376_2406	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10597	Q9AW36_GUITH_1033_1168	100

Sequence based PCA Plot of the family - PF10597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay