3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10596

Details:

PFam ID : PF10596

PFam Domain Description : U6-snRNA interacting domain of PrP8

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 57

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10596	A8BTS5_GIAIC_1332_1491	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10596	Q00RU5_OSTTA_1516_1683	100

Sequence based PCA Plot of the family - PF10596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay