3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10595

Details:

PFam ID : PF10595

PFam Domain Description : Uncharacterised protein family UPF0564

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 73

Average sequence length: 297.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10595	D0AAQ4_TRYB9_109_322	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10595	E3MF60_CAERE_319_641	97.2

Sequence based PCA Plot of the family - PF10595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=112 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay