3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10593

Details:

PFam ID : PF10593

PFam Domain Description : Z1 domain

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 126

Average sequence length: 234.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10593	A1R3Y8_ARTAT_354_639	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10593	F0HUX2_LACDL_375_650	100

Sequence based PCA Plot of the family - PF10593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=195 Length=8
Motif3 Start=221 Length=8
Motif4 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay