3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10592

Details:

PFam ID : PF10592

PFam Domain Description : AIPR protein

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 254

Average sequence length: 295.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10592	C0B6G0_9FIRM_239_294	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10592	F0ICZ2_9FLAO_262_619	100

Sequence based PCA Plot of the family - PF10592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=39 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay