3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10589

Details:

PFam ID : PF10589

PFam Domain Description : NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 1091

Average sequence length: 45.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10589	B9Z773_9NEIS_11_78	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10589	C9K2Z8_MONAT_52_77	99.8

Sequence based PCA Plot of the family - PF10589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=16 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay