3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10588

Details:

PFam ID : PF10588

PFam Domain Description : NADH-ubiquinone oxidoreductase-G iron-sulfur binding region

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 735

Average sequence length: 40.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10588	Q4SMN1_TETNG_578_601	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10588	Q0PQF1_9GAMM_2_23	100

Sequence based PCA Plot of the family - PF10588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay