3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10587

Details:

PFam ID : PF10587

PFam Domain Description : Eukaryotic elongation factor 1 beta central acidic region

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 142

Average sequence length: 27.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10587	Q4SMN1_TETNG_578_601	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10587	Q4SMN1_TETNG_578_601	92.1

Sequence based PCA Plot of the family - PF10587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay