3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10582

Details:

PFam ID : PF10582

PFam Domain Description : Gap junction channel protein cysteine-rich domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 200

Average sequence length: 65.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10582	E4Y0N7_OIKDI_163_240	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10582	Q6TV55_9ASCI_128_160	99.4

Sequence based PCA Plot of the family - PF10582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=36 Length=17
Motif2 Start=8 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay