3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10580

Details:

PFam ID : PF10580

PFam Domain Description : Gap junction protein N-terminal region

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 25.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10580	C3ZW56_BRAFL_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10580	F1NQ16_CHICK_1_23	90.9

Sequence based PCA Plot of the family - PF10580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay