3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10577

Details:

PFam ID : PF10577

PFam Domain Description : Uncharacterised protein family UPF0560

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 43

Average sequence length: 363.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10577	D0LQM9_HALO1_374_477	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10577	A7MB22_BOVIN_34_194	100

Sequence based PCA Plot of the family - PF10577 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay