3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10571

Details:

PFam ID : PF10571

PFam Domain Description : Uncharacterised protein family UPF0547

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 88

Average sequence length: 25.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10571	A0ZG20_NODSP_48_77	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10571	A9BR26_DELAS_27_46	96.5

Sequence based PCA Plot of the family - PF10571 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay