3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10566

Details:

PFam ID : PF10566

PFam Domain Description : Glycoside hydrolase 97

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 351

Average sequence length: 589.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10566	B7ZSK2_XENLA_831_1451	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10566	D2QBE9_SPILD_23_692	100

Sequence based PCA Plot of the family - PF10566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=18
Motif2 Start=4 Length=8
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay