3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10565

Details:

PFam ID : PF10565

PFam Domain Description : N-methyl D-aspartate receptor 2B3 C-terminus

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 34

Average sequence length: 321.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10565	B7ZSK2_XENLA_831_1451	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10565	Q76E47_TAEGU_40_137	100

Sequence based PCA Plot of the family - PF10565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=467 Length=8
Motif3 Start=363 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay