3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10563

Details:

PFam ID : PF10563

PFam Domain Description : Cadmium carbonic anhydrase repeat

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 23

Average sequence length: 186.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10563	A6FY58_9DELT_14_210	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10563	Q012P2_OSTTA_98_183	63

Sequence based PCA Plot of the family - PF10563 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=39 Length=8
Motif3 Start=72 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay