3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10562

Details:

PFam ID : PF10562

PFam Domain Description : Calmodulin-binding domain C0 of NMDA receptor NR1 subunit

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 15

Average sequence length: 26.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10562	C5K9H8_9ALVE_134_235	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10562	F2YLI0_BRAFL_34_60	100

Sequence based PCA Plot of the family - PF10562 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay