3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10561

Details:

PFam ID : PF10561

PFam Domain Description : Uncharacterised protein family UPF0565

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 96

Average sequence length: 178.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10561	C5K9H8_9ALVE_134_235	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10561	B4JF14_DROGR_19_447	100

Sequence based PCA Plot of the family - PF10561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=272 Length=8
Motif2 Start=36 Length=8
Motif3 Start=228 Length=8
Motif4 Start=260 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay