3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10558

Details:

PFam ID : PF10558

PFam Domain Description : Mitochondrial 18 KDa protein (MTP18)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 118

Average sequence length: 151.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10558	B5Y3Z4_PHATC_16_131	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10558	D2VRJ6_NAEGR_28_199	100

Sequence based PCA Plot of the family - PF10558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=33
Motif2 Start=200 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay