3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10557

Details:

PFam ID : PF10557

PFam Domain Description : Cullin protein neddylation domain

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 421

Average sequence length: 65.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10557	A0ZB89_NODSP_94_106	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10557	A0DHG1_PARTE_575_646	100

Sequence based PCA Plot of the family - PF10557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=57 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay