3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10554

Details:

PFam ID : PF10554

PFam Domain Description : Ash protein family

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 151

Average sequence length: 95.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10554	E7J4Z4_ECOLX_1_50	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10554	Q0I227_HAES1_19_147	98.6

Sequence based PCA Plot of the family - PF10554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay