3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10549

Details:

PFam ID : PF10549

PFam Domain Description : ORF11CD3 domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 23

Average sequence length: 51.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10549	B0USY3_HAES2_21_54	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10549	E1VAW0_HALED_142_198	100

Sequence based PCA Plot of the family - PF10549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay