3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10545

Details:

PFam ID : PF10545

PFam Domain Description : Alcohol dehydrogenase transcription factor Myb/SANT-like

Number of Sequence in 50% Dataset : 304

Number of Sequence in Full Dataset : 642

Average sequence length: 82.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10545	E3N8F2_CAERE_23_77	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10545	Q4TAZ6_TETNG_5_110	100

Sequence based PCA Plot of the family - PF10545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=58 Length=8
Motif2 Start=5 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay