3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10544

Details:

PFam ID : PF10544

PFam Domain Description : T5orf172 domain

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 547

Average sequence length: 97.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10544	E9IZP5_SOLIN_140_194	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10544	B8EAR6_SHEB2_10_106	98.9

Sequence based PCA Plot of the family - PF10544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=57 Length=8
Motif3 Start=1 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay