3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10543

Details:

PFam ID : PF10543

PFam Domain Description : ORF6N domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 307

Average sequence length: 84.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10543	E9IZP5_SOLIN_140_194	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10543	O48434_9CAUD_23_70	98.3

Sequence based PCA Plot of the family - PF10543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=4 Length=11
Motif3 Start=33 Length=8
Motif4 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay