3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10542

Details:

PFam ID : PF10542

PFam Domain Description : Vitelline membrane cysteine-rich region

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 20

Average sequence length: 33.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10542	E9IZP5_SOLIN_140_194	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10542	Q9VMK5_DROME_153_180	100

Sequence based PCA Plot of the family - PF10542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay