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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10540
Details:

PFam ID : PF10540

PFam Domain Description : Munc13 (mammalian uncoordinated) homology domain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 118

Average sequence length: 124.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10540E0VR67_PEDHC_2_11291.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF10540Q6CVC9_KLULA_1146_1322100
Sequence based PCA Plot of the family - PF10540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=78 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay