3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10540 Details: PFam ID : PF10540 PFam Domain Description : Munc13 (mammalian uncoordinated) homology domain Number of Sequence in 50% Dataset : 37 Number of Sequence in Full Dataset : 118 Average sequence length: 124.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10540E0VR67_PEDHC_2_11291.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF10540Q6CVC9_KLULA_1146_1322100 Sequence based PCA Plot of the family - PF10540 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=78 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF10540
PFam Domain Description : Munc13 (mammalian uncoordinated) homology domain
Number of Sequence in 50% Dataset : 37
Number of Sequence in Full Dataset : 118
Average sequence length: 124.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER