3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10539

Details:

PFam ID : PF10539

PFam Domain Description : Development and cell death domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 88

Average sequence length: 114.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10539	B5YK12_THEYD_4_122	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10539	B7GER0_PHATC_436_564	100

Sequence based PCA Plot of the family - PF10539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=16 Length=8
Motif3 Start=37 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay