3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10538

Details:

PFam ID : PF10538

PFam Domain Description : Immunoreceptor tyrosine-based activation motif

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 23

Average sequence length: 22.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10538	Q4WZI8_ASPFU_8_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10538	GP_SEOUR_611_632	100

Sequence based PCA Plot of the family - PF10538 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay