3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10529

Details:

PFam ID : PF10529

PFam Domain Description : Histidine-rich Calcium-binding repeat region

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 46

Average sequence length: 15.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10529	E7NH58_YEASO_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10529	SRCH_RABIT_452_466	91.1

Sequence based PCA Plot of the family - PF10529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay