3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10528

Details:

PFam ID : PF10528

PFam Domain Description : GLEYA domain

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 71

Average sequence length: 113.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10528	E7NH58_YEASO_1_50	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10528	C5DH02_LACTC_107_243	100

Sequence based PCA Plot of the family - PF10528 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=9 Length=18
Motif3 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay