3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10520

Details:

PFam ID : PF10520

PFam Domain Description : Kua-ubiquitin conjugating enzyme hybrid localisation domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 74

Average sequence length: 163.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10520	C6MY69_9GAMM_108_264	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10520	Q4XQD9_PLACH_146_267	100

Sequence based PCA Plot of the family - PF10520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=137 Length=8
Motif2 Start=9 Length=8
Motif3 Start=126 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay