3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10513

Details:

PFam ID : PF10513

PFam Domain Description : Enhancer of polycomb-like

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 353

Average sequence length: 154.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10513	D7FMY3_ECTSI_136_215	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10513	C4QN04_SCHMA_125_302	98.2

Sequence based PCA Plot of the family - PF10513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=240 Length=11
Motif4 Start=172 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay