3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10511

Details:

PFam ID : PF10511

PFam Domain Description : Trappin protein transglutaminase binding domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 51

Average sequence length: 16.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10511	A2WY43_ORYSI_240_501	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10511	A4K2M7_PAPAN_43_59	98

Sequence based PCA Plot of the family - PF10511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay