3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10509

Details:

PFam ID : PF10509

PFam Domain Description : Galactokinase galactose-binding signature

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 746

Average sequence length: 51.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10509	Q4VXH0_HUMAN_1_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10509	A4AIJ9_9ACTN_9_60	94.0

Sequence based PCA Plot of the family - PF10509 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=21
Motif2 Start=24 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay