3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10505

Details:

PFam ID : PF10505

PFam Domain Description : NMDA receptor-regulated gene protein 2

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 35

Average sequence length: 192.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10505	A8PBA9_BRUMA_541_750	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10505	D6WZ77_TRICA_217_437	100

Sequence based PCA Plot of the family - PF10505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=139 Length=8
Motif4 Start=202 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay