3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10498

Details:

PFam ID : PF10498

PFam Domain Description : Intra-flagellar transport protein 57

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 73

Average sequence length: 292.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10498	B8CAB0_THAPS_3_163	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10498	C1MGM7_MICPC_1_367	100

Sequence based PCA Plot of the family - PF10498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=39 Length=8
Motif3 Start=7 Length=8
Motif4 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay