3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10497

Details:

PFam ID : PF10497

PFam Domain Description : Zinc-finger domain of monoamine-oxidase A repressor R1

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 139

Average sequence length: 96.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10497	A0D7D3_PARTE_441_524	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10497	C1FIL3_MICSR_123_266	100

Sequence based PCA Plot of the family - PF10497 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=34 Length=11
Motif3 Start=8 Length=8
Motif4 Start=55 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay