3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10492

Details:

PFam ID : PF10492

PFam Domain Description : Nrf1 activator activation site binding domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 24

Average sequence length: 66.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10492	B3RUN4_TRIAD_22_231	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10492	Q7PQW1_ANOGA_526_633	91.3

Sequence based PCA Plot of the family - PF10492 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay