3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10491

Details:

PFam ID : PF10491

PFam Domain Description : NLS-binding and DNA-binding and dimerisation domains of Nrf1

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 30

Average sequence length: 138.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10491	B3RUN4_TRIAD_22_231	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10491	B3RUN4_TRIAD_22_231	100

Sequence based PCA Plot of the family - PF10491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay