3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10487

Details:

PFam ID : PF10487

PFam Domain Description : Nucleoporin subcomplex protein binding to Pom34

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 95

Average sequence length: 584.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10487	Q4P1B4_USTMA_434_705	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10487	A5DST3_LODEL_49_1001	98.9

Sequence based PCA Plot of the family - PF10487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=938 Length=11
Motif2 Start=715 Length=8
Motif3 Start=532 Length=8
Motif4 Start=891 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay