3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10473

Details:

PFam ID : PF10473

PFam Domain Description : Leucine-rich repeats of kinetochore protein Cenp-F/LEK1

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 25

Average sequence length: 127.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10473	E0VU37_PEDHC_1_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10473	E7FFC1_DANRE_2025_2163	95.8

Sequence based PCA Plot of the family - PF10473 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay