3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10471

Details:

PFam ID : PF10471

PFam Domain Description : Anaphase-promoting complex APC subunit 1

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 87

Average sequence length: 77.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10471	E0VU37_PEDHC_1_100	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10471	B4H377_DROPE_1_130	100

Sequence based PCA Plot of the family - PF10471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay